Hyperscape: visualization for complex biological networks: Fig. 1.

Hyperscape: visualization for complex biological networks

MOTIVATION Network biology has emerged as a powerful tool to uncover the organizational properties of living systems through the application of graph theoretic approaches. However, due to limitations in underlying data models and visualization software, knowledge relating to large molecular assemblies and biologically active fragments is poorly represented. RESULTS Here, we demonstrate a nove...

Fig. 1

Visualization of Complex Networks Dynamics: Case Study

In this article is discussed novel method of the so-called complex networks dynamics and its visualization by means of so called coupled map lattices method. The main aim of this research is to demonstrate possibility to visualize complex network dynamics by means of the same method, that is used spatiotemporal chaos modeling. It is suggested here to use coupled map lattices system to simulate ...

Evolution of Complex Modular Biological Networks

Biological networks have evolved to be highly functional within uncertain environments while remaining extremely adaptable. One of the main contributors to the robustness and evolvability of biological networks is believed to be their modularity of function, with modules defined as sets of genes that are strongly interconnected but whose function is separable from those of other modules. Here, ...

Mosaic: making biological sense of complex networks

UNLABELLED We present a Cytoscape plugin called Mosaic to support interactive network annotation, partitioning, layout and coloring based on gene ontology or other relevant annotations. AVAILABILITY Mosaic is distributed for free under the Apache v2.0 open source license and can be downloaded via the Cytoscape plugin manager. A detailed user manual is available on the Mosaic web site (http://...